GMOD / jbrowse

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
http://jbrowse.org
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How to make the Available Tracks and Select Tracks co-exist? #775

Closed meihl closed 7 years ago

meihl commented 8 years ago

The normal Jbrowse display is like this: image But after I set the faceted track selector in jbrowse.conf, Jbrowse is displaying like this: image The normal Jbrowse available tracks is disappeared, but only the select tracks. My jbrowse.conf is modified as below: [trackSelector] type = Faceted displayColumns=label displayColumns+=key [trackSelector.renameFacets] submission = Submission ID developmental-stage = Conditions There must be errors in my setting. Could some help me? I really appreciate your response. Thank you!

cmdcolin commented 8 years ago

Are you saying that there are tracks that have disappeared once you use the faceted track selector?

cmdcolin commented 8 years ago

Or if you want to have both the faceted and the hierarchical track selectors enabled at the same time, then you might consider this plugin called ComboTrackSelector https://github.com/Arabidopsis-Information-Portal/jbrowse/tree/stable/plugins/ComboTrackSelector

@vivekkrish did a presentation on it http://www.slideshare.net/vivekkrish/jbrowse-within-the-arabidopsis-information-portal

meihl commented 8 years ago

Yes, I want to the faceted and the hierarchical track selectors enabled at the same time. I have tried to install plugin called ComboTrackSelector, but unfortunately I failed for there was no detail information about the Plugin. Still, I really appreciate your response. Thank you very much!

vivekkrish commented 8 years ago

Hi @meihl , We have updated the ComboTrackSelector repo with a README file explaining how the plugin can be configured to work with JBrowse. Please see: https://github.com/Arabidopsis-Information-Portal/ComboTrackSelector

Comments/suggestions welcome!

Thank you.

meihl commented 8 years ago

Hi @vivekkrish. I have seen that. I really appreciat your guide. Thanks a lot!

cmdcolin commented 7 years ago

Hopefully that plugin helps. I suppose convo can be continued there if there are further issues