keep zoom level when switching

[sdavey]

we would like to be able to switch chromosomes (refseqs) without changing the zoom level. Is there an option already to do this? If not, can one please be added?

[enuggetry]

Unfortunately, not that I'm aware of. It seems there are some inherent functional properties of the implementation that suggests there may be a number of corner cases to deal with.

Noted.

[nathandunn]

For Apollo, the plugin over-rides the onResize function to deal with this. I can point you to that code if you want to write your own plugin.

[sdavey]

thanks for the suggestion. I found the code at https://github.com/GMOD/Apollo and will take a look.

Sean Davey Dept. of Cellular and Molecular Medicine University of Arizona sdavey@email.arizona.edumailto:sdavey@email.arizona.edu

On Nov 15, 2016, at 4:45 PM, Nathan Dunn notifications@github.com<mailto:notifications@github.com> wrote:

For Apollo, the plugin over-rides the onResize function to deal with this. I can point you to that code if you want to write your own plugin.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/GMOD/jbrowse/issues/829#issuecomment-260807396, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ALOspjuWPoCFz0z4iQQ9VWz9s3wg7x-oks5q-kQcgaJpZM4Kt_9a.

[nathandunn]

You can try here:

https://github.com/GMOD/Apollo/blob/master/client/apollo/js/main.js#L219 https://github.com/GMOD/Apollo/blob/master/client/apollo/js/main.js#L219

Though there might be better ways to do this, as well.

Nathan

On Nov 15, 2016, at 3:49 PM, sdavey notifications@github.com wrote:

thanks for the suggestion. I found the code at https://github.com/GMOD/Apollo and will take a look.

Sean Davey Dept. of Cellular and Molecular Medicine University of Arizona sdavey@email.arizona.edumailto:sdavey@email.arizona.edu

On Nov 15, 2016, at 4:45 PM, Nathan Dunn notifications@github.com<mailto:notifications@github.com> wrote:

For Apollo, the plugin over-rides the onResize function to deal with this. I can point you to that code if you want to write your own plugin.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/GMOD/jbrowse/issues/829#issuecomment-260807396, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ALOspjuWPoCFz0z4iQQ9VWz9s3wg7x-oks5q-kQcgaJpZM4Kt_9a.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/GMOD/jbrowse/issues/829#issuecomment-260808082, or mute the thread https://github.com/notifications/unsubscribe-auth/AAt2qqwqGLTquuWNzId_2C_986yQXt9wks5q-kTygaJpZM4Kt_9a.

[sdavey]

looks great. thanks again.

Sean Davey Dept. of Cellular and Molecular Medicine University of Arizona sdavey@email.arizona.edumailto:sdavey@email.arizona.edu

On Nov 15, 2016, at 4:51 PM, Nathan Dunn notifications@github.com<mailto:notifications@github.com> wrote:

You can try here:

https://github.com/GMOD/Apollo/blob/master/client/apollo/js/main.js#L219 https://github.com/GMOD/Apollo/blob/master/client/apollo/js/main.js#L219

Though there might be better ways to do this, as well.

Nathan

On Nov 15, 2016, at 3:49 PM, sdavey notifications@github.com<mailto:notifications@github.com> wrote:

thanks for the suggestion. I found the code at https://github.com/GMOD/Apollo and will take a look.

Sean Davey Dept. of Cellular and Molecular Medicine University of Arizona sdavey@email.arizona.edumailto:sdavey@email.arizona.edumailto:sdavey@email.arizona.edu

On Nov 15, 2016, at 4:45 PM, Nathan Dunn notifications@github.com<mailto:notifications@github.commailto:notifications@github.com> wrote:

For Apollo, the plugin over-rides the onResize function to deal with this. I can point you to that code if you want to write your own plugin.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/GMOD/jbrowse/issues/829#issuecomment-260807396, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ALOspjuWPoCFz0z4iQQ9VWz9s3wg7x-oks5q-kQcgaJpZM4Kt_9a.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/GMOD/jbrowse/issues/829#issuecomment-260808082, or mute the thread https://github.com/notifications/unsubscribe-auth/AAt2qqwqGLTquuWNzId_2C_986yQXt9wks5q-kTygaJpZM4Kt_9a.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/GMOD/jbrowse/issues/829#issuecomment-260808494, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ALOspvXV8dL4DaKTNl-bR6AT75aRtSO7ks5q-kV0gaJpZM4Kt_9a.

[nathandunn]

Also, I had a problem with some customizations I was making and had to add this after that code. Again, not sure if it was the best way, but it worked:

    browser.afterMilestone( 'completely initialized', function() {
        var view  = browser.view ;
        var projectionString = view.ref.name ;
        var projectionLength = window.parent.getProjectionLength(projectionString);
        var ratio = view.elem.clientWidth  / projectionLength  ;

        browser.view.pxPerBp = ratio ;
        browser.view.onResize();
    });

[rbuels]

This is an interesting one, because I can see how some users might want this behavior, but others might not. This sounds like a good idea for a plugin.