How to display multiple alignment format (MAF)

GMOD / jbrowse

JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

http://jbrowse.org

Other

460 stars 199 forks source link

How to display multiple alignment format (MAF) #864

Closed newuser1971 closed 7 years ago

newuser1971 commented 7 years ago

I want to know how to display MAF as a track.

cmdcolin commented 7 years ago

You could try using this jbrowse plugin https://github.com/cmdcolin/mafviewer !

It is a little sophisticated to setup (it requires the maf to be pre-processed and using jbrowse master branch currently) but I'd be interested if it helps.

cmdcolin commented 7 years ago

Seems like there was maybe some confusion and it's not clear that MAF format was what was wanted, but if you want to try maf check out that plugin!