search

GMOD / mimosa

Miniature Model Organism Sequence Aligner
http://gmod.github.com/mimosa/
Artistic License 2.0
4 stars 2 forks source link

Sequence sets should filter the program list, not the other way around #78

Open rbuels opened 13 years ago

rbuels commented 13 years ago

If the BLAST program list is non-dynamic (i.e. does not depend on the selected sequence sets), it should contain all the programs supported by blastall.

If it is dynamic (preferable), the BLAST program dropdown should contain the BLAST programs that make sense for BLASTing against the databases that have been selected in the grid.

The current SGN BLAST tool has a dynamic program select, refer to that for an example.

rbuels commented 13 years ago

Ah, I see, right now the blast program box filters the sequence sets. It should be the other way around: the sequence sets should filter the BLAST program box. Users will go right to picking sequence sets, the choice of program is sort of an afterthought for them.

leto commented 13 years ago

The sequence sets listed is filtered by the blast program that is chosen.

What you are saying is that it should be the other way around?

On Mon, Jun 13, 2011 at 10:28 PM, rbuels reply@reply.github.com wrote:

If the BLAST program list is non-dynamic (i.e. does not depend on the selected sequence sets), it should contain all the programs supported by blastall.

If it is dynamic (preferable), the BLAST program dropdown should contain the BLAST programs that make sense for BLASTing against the databases that have been selected in the grid.

The current SGN BLAST tool has a dynamic program select, refer to that for an example.

Reply to this email directly or view it on GitHub: https://github.com/GMOD/mimosa/issues/78

Jonathan "Duke" Leto jonathan@leto.net 209.691.DUKE // http://leto.net NOTE: Personal email is only checked twice a day at 10am/2pm PST, please call/text for time-sensitive matters.

rbuels commented 13 years ago

Yes indeed.