Closed ppouchin closed 4 years ago
The SAM generated when aligning reads on TEs is full. As only "half-mapped" pairs are relevant, filtering the output of "bwa sampe" reduces the size of the SAM file without changing the results.
The SAM generated when aligning reads on TEs is full. As only "half-mapped" pairs are relevant, filtering the output of "bwa sampe" reduces the size of the SAM file without changing the results.