Updates folder clean up and zip steps in iFIND script

GSTT-CSC / XNAT

Tracks general documentation, standard operating procedures (SOP) and helper scripts for XNAT.

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Closed heyhaleema closed 2 years ago

heyhaleema commented 2 years ago

This PR updates the iFIND data processing script to:

Simplify folder clean up steps, i.e.
- Deletes all folders except for 1 in pre-de-identification stage to handle unexpected folder structures
- Deletes all folders except for clean in post-de-identification stage
Properly zip processed folders in correct location, i.e. without recreating folder structure of path