GSTT-CSC / hazen

Quality assurance framework for Magnetic Resonance Imaging
https://github.com/GSTT-CSC/hazen
Apache License 2.0
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Report images for relaxometry task #360

Closed sophie22 closed 1 year ago

sophie22 commented 1 year ago

Currently the relaxometry task is not yet refactored to inherit from the HazenTask class and it's figures and diagrams generated with the --show_rois, --show_template_fit and --show_relax_fits options are not available. Currently matplotlib is not configured to be able to make pop out windows to show these diagrams and it's not implemented to save these figures.

I propose to refactor the report generation part of the relaxometry task to follow the procedure of other tasks and save the figures to file with the --report option, replacing the current the individual options.

tomaroberts commented 1 year ago

Resolved by #361