GSTT-CSC / hazen

Quality assurance framework for Magnetic Resonance Imaging
https://github.com/GSTT-CSC/hazen
Apache License 2.0
22 stars 12 forks source link

Improve acr_slice_thickness #442

Open mollybuckley opened 3 months ago

mollybuckley commented 3 months ago

Hoping to achieve more effective circle detection and a more robust calculation, after some reported failures

github-actions[bot] commented 3 months ago

Coverage

Coverage Report
FileStmtsMissCoverMissing
hazenlib
   ACRObject.py1121388%48, 83–89, 126, 141–144, 172–173, 211–214
   HazenTask.py29390%67–71
   __init__.py641773%104, 142–151, 153–162, 164–166, 185–191, 195
   exceptions.py21576%19–23, 42
   utils.py2406274%90, 94, 115, 128, 161, 176–189, 208, 215–222, 239, 246–248, 263–267, 283–287, 301, 326, 331, 342, 360, 422–423, 425–426, 431–456, 509, 512, 520–525, 528, 583, 592, 621
hazenlib/tasks
   acr_geometric_accuracy.py1115848%53–100, 124–239
   acr_ghosting.py1064260%42–58, 104–107, 154–157, 201–283
   acr_slice_position.py1364865%56–80, 281–348
   acr_slice_thickness.py1406057%45–64, 243–327
   acr_snr.py1325757%60–111, 131, 227–242, 287–305, 355–380
   acr_spatial_resolution.py2066867%70–100, 187, 285, 302–313, 460–539
   acr_uniformity.py803260%43–60, 150–202
   ghosting.py1485265%28–47, 67, 168–169, 176, 193–194, 249–253, 268–272, 343–385
   relaxometry.py2918969%210–211, 213, 226–231, 238–246, 277–326, 375, 409–431, 609, 655–659, 726, 811–833, 851–866
   slice_position.py1244068%30, 43–71, 129–130, 157, 273, 283–306
   slice_width.py3525285%44–48, 52, 123, 188–213, 555, 560–561, 567, 572, 648–649, 1020–1084
   snr.py1736960%45–48, 87, 103–113, 206–225, 237–247, 287–302, 328–338, 343–359, 397–413, 426–432, 475–493
   snr_map.py108199%159
   spatial_resolution.py2464482%50–54, 58, 90, 213, 294, 460–501
   uniformity.py791976%59–63, 67, 118–119, 126, 174–204
TOTAL292383172% 

Tests Skipped Failures Errors Time
205 0 :zzz: 0 :x: 0 :fire: 2m 18s :stopwatch: