GSTT-CSC / hazen

Quality assurance framework for Magnetic Resonance Imaging
https://github.com/GSTT-CSC/hazen
Apache License 2.0
22 stars 12 forks source link

acr_uniformity update #451

Closed mollybuckley closed 3 weeks ago

mollybuckley commented 1 month ago

acr_uniformity has failed several times recently - I have rewritten the calculation method to be more in line with the method given by the ACR guidance. This gives similar results to the previous method, and also now works on image sets where it was previously failing.

github-actions[bot] commented 1 month ago

Coverage

Coverage Report
FileStmtsMissCoverMissing
hazenlib
   ACRObject.py1121388%48, 82–88, 125, 140–143, 171–172, 210–213
   HazenTask.py29390%67–71
   __init__.py641773%104, 142–151, 153–162, 164–166, 185–191, 195
   exceptions.py21576%19–23, 42
   utils.py2406274%90, 94, 115, 128, 161, 176–189, 208, 215–222, 239, 246–248, 263–267, 283–287, 301, 326, 331, 342, 360, 422–423, 425–426, 431–456, 509, 512, 520–525, 528, 583, 592, 621
hazenlib/tasks
   acr_geometric_accuracy.py1115848%53–100, 124–239
   acr_ghosting.py1064260%42–58, 104–107, 154–157, 201–283
   acr_slice_position.py1364865%56–80, 281–348
   acr_slice_thickness.py1446654%47–79, 178, 256–340
   acr_snr.py1325757%60–111, 131, 227–242, 287–305, 355–380
   acr_spatial_resolution.py2066867%70–100, 187, 285, 302–313, 460–539
   acr_uniformity.py793259%43–60, 130–182
   ghosting.py1485265%28–47, 67, 168–169, 176, 193–194, 249–253, 268–272, 343–385
   relaxometry.py2918969%210–211, 213, 226–231, 238–246, 277–326, 375, 409–431, 609, 655–659, 726, 811–833, 851–866
   slice_position.py1244068%30, 43–71, 129–130, 157, 273, 283–306
   slice_width.py3525285%44–48, 52, 123, 188–213, 555, 560–561, 567, 572, 648–649, 1020–1084
   snr.py1736960%45–48, 87, 103–113, 206–225, 237–247, 287–302, 328–338, 343–359, 397–413, 426–432, 475–493
   snr_map.py108199%159
   spatial_resolution.py2464482%50–54, 58, 90, 213, 294, 460–501
   uniformity.py791976%59–63, 67, 118–119, 126, 174–204
TOTAL292683771% 

Tests Skipped Failures Errors Time
205 0 :zzz: 0 :x: 0 :fire: 3m 24s :stopwatch: