GSTT-CSC / project-template

Template for new projects
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PTD - Imaging Segmentation Template #75

Open mikewoodward94 opened 1 month ago

mikewoodward94 commented 1 month ago

Description

One of the types of projects that the CSC works on are imaging segmentation. The project template should be set up so that these projects are easily started using the CSC ways of working. This includes running using our MLOps framework.

A potential solution for this is the work that has been done for AutoSegCT that utilises nnUNet.

Requirements

  1. A full workflow for creating an imaging segmentation model exists within the project template.
  2. This includes datamodule and train.py script.
  3. Runs using csc mlops.