Open tim-snyder-wustl opened 2 years ago
From Toni regarding custom transition strategies for the workflow chain (we do not need any):
For DNA preps, we are not creating intermediates (cDNA, mRNA) like we do for RNA pipeline, so I don’t think we will need to do that. Unless you want to treat the exome libraries like that (create a “prehyb” intermediate library, rather than having to transition to another workflow for the posthyb steps). To me, it makes more sense to do it as another workflow step than as an intermediate, because in some cases we may sequence both the intermediate library and the exome library (*which might be tricky as well).
exome library == illumina library
Note: This task is too large for one ticket. Break this ticket up in to smaller tickets.
Clone the current RNA NGS workflow chain (via YML file) for Toni's lab and adjust accordingly for handling DNA.
Entities to add
Workflows to add
Workflows to modify
There are no intermediates for the DNA workflow chain! Will need to remove them once the RNA workflow chain has been cloned.
Workflow Chain Diagram