In line 60 of get-parent-taxid-of-blacklist.py:
with open(taxIdFile, "w") as FW:
The 'w' truncates the file with each new taxid it adds to the output, resulting in only one taxid at the end of the process.
I propose to change this to:
with open(taxIdFile, "a+") as FW:
This will do the same without truncating the output file with each new taxid it finds to add to the blacklist.
HadleyKing
commented
11 months ago
In line 60 of get-parent-taxid-of-blacklist.py:
with open(taxIdFile, "w") as FW:The 'w' truncates the file with each new taxid it adds to the output, resulting in only one taxid at the end of the process.I propose to change this to:
with open(taxIdFile, "a+") as FW:This will do the same without truncating the output file with each new taxid it finds to add to the blacklist.Please share your thoughts. Cheers!