Update SlimNT and create thorough documentation for how to update

GW-HIVE / slimNT

MIT License

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Update SlimNT and create thorough documentation for how to update #7

Open penningtonea opened 1 hour ago

penningtonea commented 1 hour ago

The slimNT database must be updated every 6 months and indexed on HIVE 1. The procedure to update the database is by running the entire nextflow pipeline on pegasus.

Create thorough documentation on executing the workflow, moving the db to hive, and indexing.

penningtonea commented 1 hour ago

BLOCKER:

Seem to have an issue with Pegasus disconnecting and stopping the job. Email Adam Wong to coordinate slurm controller exiting before the job is finished.