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GWW / scsnv

scSNV Mapping tool for 10X Single Cell Data
MIT License
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Download RNA editing annotation file REDIportal #25

Closed Qirong-Lin closed 1 year ago

Qirong-Lin commented 1 year ago

Hi again,

Sorry for bothering again but I was trying to run scsnvmisc annotate in order to have the pileup_passed_snvs.txt.gz file. Thanks for the detailed instruction for downloading SNV/repeat/RNA editing database, I successfully downloaded some of them, but for REDIportal, they only provided the txt file from this link, instead of the bed file as you showed. I tried to use the txt file and it still worked somehow. Should I keep using the txt file or do I need to find out the way to download/generate the bed file?

Best, Qirong

GWW commented 1 year ago

That file should work without issue. I think they used to give it as a bed file despite the file not being in bed format. I've updated the readme. Thanks for bringing this up.

Qirong-Lin commented 1 year ago

Great! Yes I saw the change. Many thanks!