Closed monoplasty closed 1 year ago
Hi,
I apologize that you are having issues getting this working. I know it can be frustrating.
The problem is not with scsnv
but with a required python package. I have had success getting it to work by using pip install cyvcf2 ncls
, instead of using the setuptools requirement installation.
The problem could be that your numpy version has depreciated an API that cyvcf2
required. I am currently using NumPy v1.20.3 and v1.24.2 with no issue.
When I run python setup.py install on a centos8 machine, the following error occurs.
However, I have downloaded the
htscodecs
(https://github.com/samtools/htscodecs)[https://github.com/samtools/htscodecs] project to the htslib directory, but this path error still occurs.my envs:
So I changed to a centos7 machine, but an error also occurred during the make step. It took me 2 days, and I still haven't compiled it yet. feel very frustrated. Could you please give me some suggestions? Thanks for your help.