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GWW / scsnv

scSNV Mapping tool for 10X Single Cell Data
MIT License
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Installation error: configure: error: /bin/sh ./config.sub unknown-Darwin failed #31

Closed nash5202 closed 11 months ago

nash5202 commented 1 year ago

Hi,

I am trying to install scsnv in MacOS Ventura and am encountering the following issue when I do 'make' in build directory:

`configure: error: /bin/sh ./config.sub unknown-Darwin failed

make[2]: *** [/scsnv/external/htslib/libhts.a] Error 1

make[1]: *** [src/CMakeFiles/libhts.dir/all] Error 2

make: *** [all] Error 2 `

Can you please let me know what might be the problem here? I have tried looking this issue up but to no avail. Any help is highly appreciated.

Thank you.

Best regards, Nash

GWW commented 1 year ago

Hi. I am not sure why it isn't compiling. I don't use MacOS anymore. But have you installed the xcode command line tools? Could you try cd external/htslib and type autoreconf -i && ./configure --without-libdeflate and tell me what the output is?

Thanks