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GZHoffie
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approximate-string-matching
A repository of experimental code and benchmark for greedy/dynamic programming approximate string matching algorithms.
MIT License
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Analysis of Alignment Algorithms in Parallelized Version
#13
GZHoffie
opened
2 years ago
0
Study `SwAligner::alignNucleotidesEnd2EndSseU8` and `SwAligner::alignNucleotidesEnd2EndSseI16` functions and find where the dynamic programming steps are done.
#12
GZHoffie
opened
2 years ago
0
Benchmark with Bowtie2
#11
GZHoffie
opened
2 years ago
2
Support for affine gap penalty scheme
#10
GZHoffie
closed
2 years ago
0
Support for strings of length longer than 128 or 256
#9
GZHoffie
opened
2 years ago
0
Use avx2 instead of sse for hurdle matrix
#8
GZHoffie
opened
2 years ago
0
Theoretical analysis of error bound
#7
GZHoffie
opened
2 years ago
0
Fast least significant bit finding using de brujin sequence
#6
GZHoffie
closed
2 years ago
1
Implementation of GASMA in C/C++ and Benchmarking
#5
GZHoffie
closed
2 years ago
0
Debug and Improve GASMA
#4
GZHoffie
closed
2 years ago
0
Improving GASMA
#3
GZHoffie
closed
3 years ago
3
Draft code for GASMA
#2
GZHoffie
closed
3 years ago
2
Plan for LEAP
#1
GZHoffie
closed
2 years ago
0