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Gabaldonlab / redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
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Different outputs #109

Closed tamsinlh closed 7 months ago

tamsinlh commented 8 months ago

Hello.

How important are the versions of gcc and python versions? I, supposedly successfully, ran redundans on my installation which I think used gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36) and Python 2.7.15. I ran the same code on another person's installation with python/3.9.6 and gcc/9.2.0 and received a slightly longer output with far more scaffolds (227 scaffolds vs 839 scaffolds).

The line I ran was ./redundans.py -v -i AJ_trimmed.R1.fq AJ_trimmed.R2.fq -l amberjack.all.subreads.fasta.gz -f AJ_November_nextpolish.fasta -o AJ_February -t 20 --resume

Please advise.

Dfupa commented 7 months ago

This issue is marked as stale by the stale_bot.

Dfupa commented 7 months ago

This issue was closed by the stale_bot because it has been stalled for 7 days with no activity.