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Gabaldonlab / redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
GNU General Public License v3.0
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OSError: [Errno 8] Exec format error #77

Closed emmannaemeka closed 4 years ago

emmannaemeka commented 4 years ago

Trying to run redundans with the commandline python2.7 redundans.py -v --reference …fasta -f …firstrun.fasta -o /Users/emmannadi/Documents/

Error

File "redundans.py", line 541, in main() File "redundans.py", line 529, in main _check_dependencies(dependencies) File "redundans.py", line 443, in _check_dependencies p = subprocess.Popen([cmd, '--version'], stdout=subprocess.PIPE, stderr=subprocess.PIPE) File "/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 394, in init errread, errwrite) File "/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 1047, in _execute_child raise child_exception

lpryszcz commented 4 years ago

Hi @emmannaemeka , likely you're missing some basic dependency or are working on tropical system. What's your system? Also you can try commenting _check_dependencies(dependencies) line in redundans.py and running again. Let me know if it helped :)