Closed emmannaemeka closed 4 years ago
Hi @emmannaemeka , likely you're missing some basic dependency or are working on tropical system. What's your system?
Also you can try commenting _check_dependencies(dependencies)
line in redundans.py and running again.
Let me know if it helped :)
Trying to run redundans with the commandline python2.7 redundans.py -v --reference …fasta -f …firstrun.fasta -o /Users/emmannadi/Documents/
Error
File "redundans.py", line 541, in
main()
File "redundans.py", line 529, in main
_check_dependencies(dependencies)
File "redundans.py", line 443, in _check_dependencies
p = subprocess.Popen([cmd, '--version'], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
File "/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 394, in init
errread, errwrite)
File "/usr/local/Cellar/python@2/2.7.17/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 1047, in _execute_child
raise child_exception