issues
search
GabrielHoffman
/
variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
http://gabrielhoffman.github.io/variancePartition/
60
stars
14
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
makeContrastsDream for Interaction Guidance
#105
abadgerw
closed
2 weeks ago
1
Error: missing value where TRUE/FALSE needed with categorical variables
#104
ecrusu
closed
1 month ago
3
No testable fixed effect were included in the model
#103
yasamanrezvani
opened
1 month ago
4
Can't run with any random effects specified
#102
bk1n
closed
1 month ago
2
Error in fitExtractVarPartModel: response variance < 1e-05
#101
sklasek
closed
2 months ago
2
Encountered an error when running the example, and my matrix package was version 1.6-1.1.
#100
fengqlin
closed
4 months ago
1
Large difference in results between v1.28.9 and v1.35.3
#99
alexvpickering
closed
5 months ago
6
Warning message: In .standard_transform(ret): No testable fixed effects were included in the model.
#98
JEJKarppinen
closed
5 months ago
3
voomWithDreamWeights() does not work with raw counts
#97
yonbar
closed
5 months ago
4
Error in if (inherits(possibleError, "error") && grep("the fixed-effects model matrix is column rank deficient", : missing value where TRUE/FALSE needed
#96
sdwang008
closed
5 months ago
2
Enable fitting of non-full rank formula
#95
jmichuda
closed
5 months ago
3
Parameters to increase iterations for model fitting of genes
#94
shoffm
closed
9 months ago
3
Can this be used on scRNA-seq dataset?
#93
Jiayi-Zheng
closed
10 months ago
4
Issue with failing responses and Kenward-Roger method
#92
hayleywelsh
closed
9 months ago
23
RStudio/BiocParallel warning cause execution to crash
#91
yonbar
closed
11 months ago
4
p-values
#90
palbioinfor
closed
9 months ago
4
Questions about P.values
#89
Jayanth-Sreekanth
closed
1 year ago
4
Devel
#88
GabrielHoffman
closed
1 year ago
0
voomWithDreamAndQualityWeights?
#87
knokknok
closed
9 months ago
1
Adjusting R2
#86
MEladawi
closed
9 months ago
2
fix omp
#85
GabrielHoffman
closed
1 year ago
0
Devel
#84
GabrielHoffman
closed
1 year ago
0
update on exit
#83
GabrielHoffman
closed
1 year ago
0
Devel
#82
GabrielHoffman
closed
1 year ago
0
Devel
#81
GabrielHoffman
closed
1 year ago
0
update
#80
GabrielHoffman
closed
1 year ago
0
2.0.5
#79
GabrielHoffman
closed
1 year ago
0
2.0.4
#78
GabrielHoffman
closed
1 year ago
0
Error in checkModelStatus(fitInit, showWarnings = showWarnings, colinearityCutoff = colinearityCutoff) : boundary (singular) fit: see help('isSingular')
#77
Jason-bot-stack
closed
1 year ago
0
update
#76
GabrielHoffman
closed
1 year ago
0
bug fix
#75
GabrielHoffman
closed
1 year ago
0
Devel
#74
GabrielHoffman
closed
1 year ago
0
BiocParallel
#73
nickhsmith
closed
1 year ago
1
Error in if (inherits(possibleError, "error") && grep("the fixed-effects model matrix is column rank deficient", : missing value where TRUE/FALSE needed
#72
stanleyjs
closed
1 year ago
4
just the toy dataset example not working.
#71
zntaylgit
closed
1 year ago
2
collinearity issue
#70
jonahcullen
closed
2 years ago
2
p-values of the correlation from "canCorPairs"
#69
se2cheeese
closed
2 years ago
2
There are NA values -- Missing data is not allowed
#68
DMPKendo
closed
2 years ago
1
Assessing significance of genes
#67
jcgrenier
closed
2 years ago
4
dream(): Evaluate function error --> "Error evaluating fxn:"
#66
aidarripoll
closed
2 years ago
14
equivalent parameterization of the fix effects lead to different estimates
#65
coralzhang
closed
2 years ago
1
Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
#64
evaesquinas
closed
2 years ago
8
How to use BiocParallel and variancePartition?
#63
evaesquinas
closed
2 years ago
4
Can variancePartition handle TPM normalized counts as the input?
#62
evaesquinas
closed
2 years ago
5
Can variancePartition be used for analyzing single-cell data?
#61
DongzeHE
closed
2 years ago
2
Error encountered when running the example dataset
#60
DongzeHE
closed
2 years ago
4
Remove batch effect before fitting the model
#59
evaesquinas
closed
2 years ago
10
confint option for topTable function not working
#58
jcgrenier
closed
2 years ago
6
Why are my adjusted p-values all the same in my output from my dream analysis?
#57
dahrendorff
closed
2 years ago
2
error when running fitExtractVarPartModel()
#56
luthientinuviel
closed
2 years ago
4
Next