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GabrieleLozupone / AXIAL

This is a code implemention of the diagnosis and XAI framework proposed in the paper "Attention-based eXplainability for Interpretable Alzheimer's Localized Diagnosis using 2D CNNs on 3D MRI brain scans".
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convert the ADNI data to BIDS format #3

Open Wusat824 opened 2 months ago

Wusat824 commented 2 months ago

I am encountering an issue while attempting to file err using Clinica. The command I am running is:

clinica convert adni-to-bids -m T1 "E:\ADNI-Screening-1.5T-AD-Complete\RAW_Data" "E:\ADNI-Screening-1.5T-AD-Complete\csv" "E:\ADNI-Screening-1.5T-AD-Complete\BIDS_Directory"

the error is 

raise ValueError("Empty dataset detected. Clinical data cannot be extracted.")

ValueError: Empty dataset detected. Clinical data cannot be extracted.

Can you provide any suggestions on how to resolve this issue? (i try clinica 0.7.6. and version 0.8.3) but its shows same error

I would greatly appreciate any guidance or recommendations you have to help me move forward with the BIDS conversion process.

zzjkh commented 3 weeks ago

I also encountered some problems in the process of converting data format, due to the update of the website, I can't effectively get all the CSV table data, I really hope to get your help

jia-huang commented 1 week ago

it needs four csv file , but we just get one, what can i do to get else three csv file?

Loading needed .csv files

adni_merge = load_clinical_csv(csv_dir, "ADNIMERGE")
mprage_meta = load_clinical_csv(csv_dir, "MPRAGEMETA")
mri_quality = load_clinical_csv(csv_dir, "MRIQUALITY")
mayo_mri_qc = load_clinical_csv(csv_dir, "MAYOADIRL_MRI_IMAGEQC_12_08_15")
jia-huang commented 1 week ago

I also encountered some problems in the process of converting data format, due to the update of the website, I can't effectively get all the CSV table data, I really hope to get your help

do you address this problem?