Create a 2D dataset of resected brains - Githubissues

GabriellaKamlish / BrainResection

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Create a 2D dataset of resected brains #2

Open fepegar opened 4 years ago

fepegar commented 4 years ago

Tasks:

[x] Install and test resector
[x] Create a Python function to generate a PNG image + resection hemisphere that can be used for training (see below)
[ ] Create training dataset from either real (Queen Square patients) or synthetic data (created with resector)

def make_2d_training_instance(mri_path, segmentation_path):
    # Your code here
    [...]
    return slice_png_path, hemisphere