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Gaius-Augustus / Augustus

Genome annotation with AUGUSTUS
http://bioinf.uni-greifswald.de/webaugustus/
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non-canonical splicing #312

Open swarbred opened 3 years ago

swarbred commented 3 years ago

I wondered if there were any update planned to support ab intio prediction of splice sites outside of gt-ag and gc-ag. I'm aware there is support for annotating non-canonical sites via hints e.g. viewtopic.php?f=5&t=124&p=490&hilit=canonical#p490

Other groups have made there own edits e.g. https://github.com/chancx/dinoflag-alt-splice to support ga-ag splicing but I wanted to see if there was any recent / future changes that would support this before we take a similar approach.

MarioStanke commented 3 years ago

Thanks for asking. I have no such plan.