I used Augustus via REAT prediction pipeline (https://github.com/EI-CoreBioinformatics/reat) to train a model for Mesotaenium endlicherianum (a Zygnematophyceae algae). I performed augustus metaparameter optimization. I used kfold=8. The genome of this organism has been sequenced previously by https://doi.org/10.1016/j.cell.2019.10.019 . Unfortunately, they did not provide the Augustus trained model. Also, they provided only hard masked genome. Since I did not have access to unmasked genome, I used the hard mask file to train the model.
I used Augustus via REAT prediction pipeline (https://github.com/EI-CoreBioinformatics/reat) to train a model for Mesotaenium endlicherianum (a Zygnematophyceae algae). I performed augustus metaparameter optimization. I used kfold=8. The genome of this organism has been sequenced previously by https://doi.org/10.1016/j.cell.2019.10.019 . Unfortunately, they did not provide the Augustus trained model. Also, they provided only hard masked genome. Since I did not have access to unmasked genome, I used the hard mask file to train the model.