Hello, I have an error when I use Augustus, I run the code as:
augustus --species=verticillium_albo_atrum1 --AUGUSTUS_CONFIG_PATH=/public/home/software/opt/bio/software/augustus/3.3.3/config/ --uniqueGeneId=true ../../repeat2/V991.rawchrom.FINAL.fasta.masked >V991-rep2.gff
But the V991-rep2.gff file generated after I run it should be in gtf format, so why do I use gtf2gff.pl to convert the format into gff3 format for EVidenceModeler to integrate genome injection and say that my file needs gff3 format Only then can the EVidenceModeler software be run.
A user reported by email:
Hello, I have an error when I use Augustus, I run the code as:
augustus --species=verticillium_albo_atrum1 --AUGUSTUS_CONFIG_PATH=/public/home/software/opt/bio/software/augustus/3.3.3/config/ --uniqueGeneId=true ../../repeat2/V991.rawchrom.FINAL.fasta.masked >V991-rep2.gff
But the V991-rep2.gff file generated after I run it should be in gtf format, so why do I use gtf2gff.pl to convert the format into gff3 format for EVidenceModeler to integrate genome injection and say that my file needs gff3 format Only then can the EVidenceModeler software be run.