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Gaius-Augustus / Augustus

Genome annotation with AUGUSTUS
http://bioinf.uni-greifswald.de/webaugustus/
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optimize_augustus.pl causes segmentation fault with large number of training gense #42

Open KatharinaHoff opened 5 years ago

KatharinaHoff commented 5 years ago

For not yet understood reasons, optimize_augustus.pl crashes when in run in parallel mode on a huge number of training genes. The issue has been reported at:

https://github.com/Gaius-Augustus/BRAKER/issues/17

We can reproduce the problem for example with Parasteatoda genome when running braker.pl in esmode and not downsampling the training genes to 8000 (which was a "guess", not an experimentally determined threshold).

MarioStanke commented 5 years ago

Is the crash from the augustus binary, from etraining or from the perl script itself?