Open cliftonlewis opened 1 year ago
Hi, I'm also getting this same error- did you manage to resolve this?
Hi, I am also getting the same error. How did you end up resolving it?
Hi, I am also getting the same error. How did you end up resolving it?
Hi,
I am getting an error with the ProtHint step and I'm not sure what the cause of it is. Could it be because it couldn't find enough memory or something?
error: ProtHint exited due to an error in command: /opt/ETP/bin/gmes/ProtHint/bin/run_spliced_alignment.pl --cores 20 --nuc ../nuc.fasta --list /data/evassvis/cl486/diamond/diamond.out --prot /data/evassvis/cl486/protyz6r7p9p --v --aligner spaln --min_exon_score 25 --longGene 30000 --longProtein 15000 ERROR in file /opt/BRAKER/scripts/braker.pl at line 4116 Failed to execute /opt/ETP/bin/gmes/ProtHint/bin/prothint.py --threads=20 --geneMarkGtf /data/evassvis/cl486/GeneMark-ES/genemark.gtf /data/evassvis/cl486/genome.fa /data/evassvis/cl486/proteins.fa!