Failed to create directory!

Gaius-Augustus / BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

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Failed to create directory! #791

Closed karthickbrlab closed 3 months ago

karthickbrlab commented 3 months ago

Braker Failed to create directory!

Sun Mar 24 11:20:59 2024: Log information is stored in file /home/BRAKER/scripts/braker/braker.log ERROR in file braker.pl at line 1173 Failed to create direcotry /home/BRAKER/scripts/braker/GeneMark-ES!

KatharinaHoff commented 3 months ago

This looks like a file system problem, not a BRAKER problem. The executing user needs writing permission.

simonharnqvist commented 3 months ago

Hi - I'm having this problem too, and I definitely have writing permission where I am trying to run it. It would help to know the path of the directory it is trying to create - the current error message isn't very informative.

karthickbrlab commented 3 months ago

Found that, BRAKER can't overwrite the file. So it produces error creating directory!. /home/BRAKER/scripts/braker..

Remove the braker folder from previous run. it will work normally.

By the way, IS THERE ANY OPTION TO OVERWRITE/RERUN IF RUN FAILS PREMATURELY?