BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
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within set_JAVA_PATH, generalize check for java version and prevent substitutions within awk command #796
Within set_JAVA_PATH, generalizes the check for java version to grep just for version (e.g., our system java is not OpenJDK) and fences off the awk command within single quotes to prevent substitution of the contained $2,$3 with empty values that occurred because the surrounding context was double quotes.
Within
set_JAVA_PATH
, generalizes the check for java version togrep
just forversion
(e.g., our system java is not OpenJDK) and fences off the awk command within single quotes to prevent substitution of the contained$2,$3
with empty values that occurred because the surrounding context was double quotes.