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Gaius-Augustus / BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
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Bam files overwriting each other #832

Open Tsaranoga opened 1 month ago

Tsaranoga commented 1 month ago

When adding multiple bam files with the same name, they overwrite each other while doing the sorting. (braker.pl line 5501)

KatharinaHoff commented 1 month ago

I see how that can happen. The easiest solution is that you create softlinks of your files so that they do not all have the same name.

On Fri, May 24, 2024 at 11:37 AM Tsaranoga @.***> wrote:

When adding multiple bam files with the same name, they overwrite each other while doing the sorting. (braker.pl line 5501)

— Reply to this email directly, view it on GitHub https://github.com/Gaius-Augustus/BRAKER/issues/832, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJMC6JBUA2QGX77FCURM24DZD4C4RAVCNFSM6AAAAABIHHNB5CVHI2DSMVQWIX3LMV43ASLTON2WKOZSGMYTIOJTGEYTONY . You are receiving this because you are subscribed to this thread.Message ID: @.***>

KatharinaHoff commented 1 month ago

Or rename them.

On Fri, May 24, 2024 at 12:19 PM Katharina Hoff @.***> wrote:

I see how that can happen. The easiest solution is that you create softlinks of your files so that they do not all have the same name.

On Fri, May 24, 2024 at 11:37 AM Tsaranoga @.***> wrote:

When adding multiple bam files with the same name, they overwrite each other while doing the sorting. (braker.pl line 5501)

— Reply to this email directly, view it on GitHub https://github.com/Gaius-Augustus/BRAKER/issues/832, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJMC6JBUA2QGX77FCURM24DZD4C4RAVCNFSM6AAAAABIHHNB5CVHI2DSMVQWIX3LMV43ASLTON2WKOZSGMYTIOJTGEYTONY . You are receiving this because you are subscribed to this thread.Message ID: @.***>