BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
I am encountering an issue with BRAKER3 version 3.0.8 while executing the get_gc_content.py script. The error message is as follows:
ERROR in file /opt/BRAKER/scripts/braker.pl at line 5939
failed to execute: /opt/BRAKER/scripts/get_gc_content.py --sequences /home/georgeta/projects/rrg-mstrom/georgeta/genome_test_tbr/tbr_final.fa --print_sequence_length 1> /localscratch/georgeta.29887041.0/braker/gc_content.out 2> /localscratch/georgeta.29887041.0/braker/errors/gc_content.stderr!
Original error was: libflexiblas.so.3: cannot open shared object file: No such file or directory
The gc_content.stderr file is empty, providing no further clues. I've ensured that the script has execute permissions and tested file paths. Could you please assist me in resolving this issue?
Dear Katharina,
I am encountering an issue with BRAKER3 version 3.0.8 while executing the get_gc_content.py script. The error message is as follows: ERROR in file /opt/BRAKER/scripts/braker.pl at line 5939 failed to execute: /opt/BRAKER/scripts/get_gc_content.py --sequences /home/georgeta/projects/rrg-mstrom/georgeta/genome_test_tbr/tbr_final.fa --print_sequence_length 1> /localscratch/georgeta.29887041.0/braker/gc_content.out 2> /localscratch/georgeta.29887041.0/braker/errors/gc_content.stderr!
Original error was: libflexiblas.so.3: cannot open shared object file: No such file or directory
The gc_content.stderr file is empty, providing no further clues. I've ensured that the script has execute permissions and tested file paths. Could you please assist me in resolving this issue?
Thank you for your time and help.