BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
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The environment variable AUGUSTUS_CONFIG_PATH #840
I tried to run braker and I obtained this message
NEXT STEP: check files and settings
ERROR: The environment variable AUGUSTUS_CONFIG_PATH is not defined. Please export an environment variable for AUGUSTUS or use --AUGUSTUS_CONFIG_PATH=path/to/augustus.
I show these codes that were used to fix the problem:
export AUGUSTUS_CONFIG_PATH=$HOME/augustus_config_path
mkdir -p $AUGUSTUS_CONFIG_PATH
I tried to run braker and I obtained this message NEXT STEP: check files and settings ERROR: The environment variable AUGUSTUS_CONFIG_PATH is not defined. Please export an environment variable for AUGUSTUS or use --AUGUSTUS_CONFIG_PATH=path/to/augustus.
I show these codes that were used to fix the problem: export AUGUSTUS_CONFIG_PATH=$HOME/augustus_config_path mkdir -p $AUGUSTUS_CONFIG_PATH
Run BRAKER
braker.pl ....
and
cp -r /apps/system/easybuild/software/AUGUSTUS/3.3.3-foss-2019b/config/ $AUGUSTUS_CONFIG_PATH
But none of them worked, does somebody have the same problem? and how did he/she solve the problem?
Thank you in advance.
Kind regards.
Adolfo Calvo-Parra Martínez