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Gaius-Augustus / BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
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Missing information about Solanum lycopersicum RNAseq used in Braker3 paper? #854

Closed JBerthelier closed 3 months ago

JBerthelier commented 3 months ago

Dear Braker3 authors,

I would like to reproduce your Braker3 analyse of Solanum lycopersicum in order to verify my installation.

I retrieved the information of proteinDB used for close relative included protein set (Supplemental Table S2).

However, it looks like the information of RNAseq used for Solanum lycopersicum is missing in the Supplemental Table S15.

Would it possible to share me which RNAseq data you used ?

Best regards,

Jeremy

LarsGab commented 3 months ago

Hello,

I'm sorry this information got lost somewhere during the manuscript writing process.

We used following RNA-Seq with following IDs from the SRA: SRR21031283, SRR21394845, SRR21394846, SRR21031293, SRR18900583, SRR18087916

Best, Lars

JBerthelier commented 3 months ago

Hello Lars,

No problem, it happens, thank you for the quick answer! That will be useful to me.

Best,

Jeremy