BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
The output gft file has score associated with all features such as exons, transcripts and genes. Can you elaborate on how these score are calculated and what should be a useful cutoff for retaining useful predictions?
The output gft file has score associated with all features such as exons, transcripts and genes. Can you elaborate on how these score are calculated and what should be a useful cutoff for retaining useful predictions?