search

Gaius-Augustus / GALBA

GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
Other
121 stars 4 forks source link

Segmentation fault #30

Closed aabaricalla closed 1 year ago

aabaricalla commented 1 year ago

Hi @KatharinaHoff ! I was wondering if there is any date for the release of the GALBA docker image with Miniprot-0.10 (r225)?

I have a "segmentation fault" error that Miniprot could be responsible for... And @lh3 reported this issue was solved in the 0.10 release version.

Thanks!

KatharinaHoff commented 1 year ago

I will compile a new container this weekend. Sorry! I

Agustin Baricalla @.***> schrieb am Fr. 14. Apr. 2023 um 19:52:

Hi @KatharinaHoff https://github.com/KatharinaHoff ! I was wondering if there is any date for the release of the GALBA docker image with Miniprot-0.10 (r225) https://github.com/lh3/miniprot/releases/tag/v0.10?

I have a "segmentation fault" error that Miniprot could be responsible for... And @lh3 https://github.com/lh3 reported this issue was solved in the 0.10 release version.

Thanks!

— Reply to this email directly, view it on GitHub https://github.com/Gaius-Augustus/GALBA/issues/30, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJMC6JGMC4MN3IWAU5XMT53XBGFGBANCNFSM6AAAAAAW6W2KZU . You are receiving this because you were mentioned.Message ID: @.***>

KatharinaHoff commented 1 year ago

I have just pushed an update to dockerhub. Please pull the latest image once more, and try again.

I apologize for not having done this, sooner. I was traveling.

aabaricalla commented 1 year ago

Thanks a lot @KatharinaHoff ! I will be testing it in a while. Your work in GALBA is wonderful. Saludos desde Argetina.-

KatharinaHoff commented 1 year ago

Is this issue solved?

KatharinaHoff commented 1 year ago

I strongly assume this issue was solved.

aabaricalla commented 1 year ago

Thanks for the improvements. This issue was solved with the update in docker!