GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
Hi, I've installed GALBA through singularity but I'm unable to change the working directory.
It currently defaults to my home directory which has a limited disk quota.
Use of uninitialized value $workDir in -d at /opt/GALBA/scripts/galba.pl line 496.
Use of uninitialized value $workDir in concatenation (.) or string at /opt/GALBA/scripts/galba.pl line 497.
Use of uninitialized value $workDir in mkdir at /opt/GALBA/scripts/galba.pl line 499.
Use of uninitialized value $workDir in concatenation (.) or string at /opt/GALBA/scripts/galba.pl line 499.
ERROR: in file /opt/GALBA/scripts/galba.pl at line 500
Failed to create directory !
Hi, I've installed GALBA through singularity but I'm unable to change the working directory. It currently defaults to my home directory which has a limited disk quota.
I've tried the following:
singularity exec galba.sif galba.pl --species=Botasp --genome=BotAsp_cleaned_renamed.fasta --prot_seq=uniprot_sprot.fasta --threads=8 --skipGetAnnoFromFasta --workingdir=/SCRATCH/GENOME_ANALYSIS/Botasphowever, here's the error I see:
Can you please help me resolve this?