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Gaius-Augustus / TSEBRA

TSEBRA: Transcript Selector for BRAKER
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Non-overlapping isoforms #16

Closed alexcorm closed 2 years ago

alexcorm commented 2 years ago

Hi,

I've combined RNA-seq and proteins evidences from Braker with Tsebra using default configuration file with great result. By manually inspecting the annotations, I found one particular case for which Tsebra produces a single gene but with 2 non-overlapping isoforms when it should produce 2 annotations.

Capture d’écran 2022-05-31 à 14 56 15

Strangely, for similar cases (one braker1 gene and multiples braker2 genes), Tsebra produces a correct result.

Thanks, Alex

LarsGab commented 2 years ago

Hi Alex,

thank you for reporting this issue!

I think I might have found the cause for this bug and fixed it with the newest commit (ec629e0c8c3aa1384cee0c0a411b4d879bd79f45). Could you please test it again with the update?

Thank you, Lars

alexcorm commented 2 years ago

Hi Lars,

Thanks Lars for the quick answer, the correction works fine!

Best, Alex

LarsGab commented 2 years ago

I close this issue since all questions have been answered or it has been inactive for a long time.