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Gaius-Augustus / TSEBRA

TSEBRA: Transcript Selector for BRAKER
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where is the gff2aa.pl script? #30

Closed joleneyue closed 1 year ago

joleneyue commented 1 year ago

Dear Developer,

i used TSEBRA to predict the genes and get the gtf file eventually.

i would like to extract the protein sequences from the gtf file, shall i use script gff2aa.pl, however, i do not find it anywhere under the tsebra installation guide.

Could you let me know the answer?

thanks A lot! Cheers, Jolene

bijendrabio commented 1 year ago

@joleneyue check Augustus utilities script folder

LarsGab commented 1 year ago

Hi,

@bijendrabio is correct, here is the URL: https://github.com/Gaius-Augustus/Augustus/blob/master/scripts/gtf2aa.pl

Best, Lars