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Gaius-Augustus / TSEBRA

TSEBRA: Transcript Selector for BRAKER
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Combining TSEBRA Output with other Annotations in GFF format #35

Open NicMAlexandre opened 1 year ago

NicMAlexandre commented 1 year ago

Hello,

I am trying to wrap my head around how best to merge these annotations. We have information from EMapper and Interproscan we would like to merge with he TSEBRA output. I am pasting below an example entry for the same gene from each of the GFF files. Any help is greatly appreciated:

Emapper.txt TSEBRA.txt InterProScan.txt

NicMAlexandre commented 1 year ago

To generate the input for the Interproscan and Emapper GFF:

agat_sp_extract_sequences.pl -g DHPbraker1+2_combined.gtf -f DHP.FINAL.chrom.fasta -p -o DHP.prot.fasta cat DHP.prot.fasta | perl -pe 's/*//g' > DHP.prot.noStar.fasta