changing the strategy in best_by_compleasm: now, missing BUSCOs are detected in genemark and augustus gene set, and if missing score is below a certain threshold (by default 15%), only the missing BUSCOs are added on top of the braker gene set. Otherwise, they are also enforced in the tsebra reruns.
GALBA support was removed because that problem is now solved with DIAMOND filter.
changing the strategy in best_by_compleasm: now, missing BUSCOs are detected in genemark and augustus gene set, and if missing score is below a certain threshold (by default 15%), only the missing BUSCOs are added on top of the braker gene set. Otherwise, they are also enforced in the tsebra reruns.
GALBA support was removed because that problem is now solved with DIAMOND filter.