Still need to remove redundant sequences after gtf files recombination?

Gaius-Augustus / TSEBRA

TSEBRA: Transcript Selector for BRAKER

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Still need to remove redundant sequences after gtf files recombination? #46

Open Flyase opened 8 months ago

Flyase commented 8 months ago

Hi, I used TSEBRA and successfully obtained the combined tsebra.gtf integrates the short-read, protein and long-read gtf files generated by braker, do I need another redundant sequence filtration with tools like cd-hit?

Thanks a lot!!

LarsGab commented 8 months ago

Hi,

there shouldn't be any redundant transcripts in the gtf file, but there may be more than one transcript isoform reported per gene.

Best, Lars