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Gaius-Augustus / learnMSA

Learning and Aligning Large Protein Families with support of protein language models.
MIT License
19 stars 3 forks source link

pytorch dependency is missing when running with pLM #11

Closed felbecker closed 1 week ago

felbecker commented 2 months ago

When running learnMSA with --use_language_model, pytorch may not properly installed. Properly add it to package dependencies.

Workaround: pip install pytorch

felbecker commented 1 week ago

Found no way to automatically install tensorflow alongside pytorch with pip. They clash in dependencies. However, it works by installing pytorch separately. See updated install instructions.