Implementation of a text-based Stochiometry DSL

GaloisInc / AMIDOL

Scientific model creation toolset.

BSD 3-Clause "New" or "Revised" License

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Implementation of a text-based Stochiometry DSL #7

Open ewdavis opened 5 years ago

ewdavis commented 5 years ago

Joshua suggested it would be useful to see a text-based stochiometry DSL for AMIDOL to show we can tackle a robust set of Abstract Knowledge Layers.

A good target for this are stochiometry equations in the form:

A + B --> C C + D --> D + E

Etc.

hsauro commented 5 years ago

Check out antimony, it may not be sophisticated enough for you but shows you something similar that has been done in the past. Then language can be exported to sbml and sbml imported.

https://tellurium.readthedocs.io/en/latest/antimony.html