Open alexlenail opened 3 years ago
Same here but with bed12
First row has 9 columns:
AssertionError: File type detected is bed6 but line 1: chr9 4679558 4703208 ENSG00000106993.11 . + HAVANA transcript . gene_id "ENSG00000106993.11"; transcript_id "ENST00000381858.5"; gene_type "protein_coding"; gene_name "CDC37L1"; transcript_type "protein_coding"; transcript_name "CDC37L1-202"; level 2; protein_id "ENSP00000371282.1"; transcript_support_level "5"; tag "not_organism_supported"; tag "basic"; havana_gene "OTTHUMG00000019465.1"; havana_transcript "OTTHUMT00000051565.1"; does not have 6 fields.
seems large than 9 columns
1 2 3 4 5 6 7 8 9 10
chr9 4679558 4703208 ENSG00000106993.11 . + HAVANA transcript . gene_id "ENSG00000106993.11"; transcript_id "ENST00000381858.5"; gene_type "protein_coding"; gene_name "CDC37L1"; transcript_type "protein_coding"; transcript_name "CDC37L1-202"; level 2; protein_id "ENSP00000371282.1"; transcript_support_level "5"; tag "not_organism_supported"; tag "basic"; havana_gene "OTTHUMG00000019465.1"; havana_transcript "OTTHUMT00000051565.1";
First row has 9 columns: