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GangCaoLab / CoolBox

Jupyter notebook based genomic data visualization toolkit.
https://gangcaolab.github.io/CoolBox/index.html
GNU General Public License v3.0
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JointView fails for .hic files #56

Closed tuomovirtanen closed 2 years ago

tuomovirtanen commented 2 years ago

Jointview does not work for .hic files. The tracks are correct but hic matrix is only plotted from one region. Coolbox version 0.3.8

Here is the output for the mcool file image image

Here is the output for .hic file image image

Nanguage commented 2 years ago

Thanks for report bug, this has been fixed in 0.3.9. image image

You can update from the source to use this fix:

$ git clone --depth=1 https://github.com/GangCaoLab/CoolBox.git
$ cd Coolbox
$ pip install .