GangCaoLab / CoolBox

Jupyter notebook based genomic data visualization toolkit.
https://gangcaolab.github.io/CoolBox/index.html
GNU General Public License v3.0
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Jointview doesn't work with HiCPeaksCoverage #59

Open gdolsten opened 2 years ago

gdolsten commented 2 years ago

When I use HiCPeaksCoverage, works in the 1-D case, but it does not work well in the jointview scenario for some reason, is this a bug?

coolbox_cooler = HiCMat(f"../matrix.mcool", balance=True, height=6, cmap='gist_heat_r')

spacer = Spacer() sub_frames = { "top": frame, # Chip-seq tracks "right": frame, # Chip-seq tracks "bottom" : spacer, }

jv = JointView(coolbox_cooler, **sub_frames, space=0, padding_bottom=10) jv.plot(start_interval, end_interval)