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GangCaoLab / CoolBox

Jupyter notebook based genomic data visualization toolkit.
https://gangcaolab.github.io/CoolBox/index.html
GNU General Public License v3.0
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How to use parameters from Class in the CLI mode? #71

Closed shunliubio closed 2 years ago

shunliubio commented 2 years ago

Hi,

This is just an example. See the command below:

coolbox add XAxis - add BED gencode.v36.annotation.bed - add TrackHeight "1.0" - goto "chr12:67301820-67323820" - plot test.pdf

Now, I would like to use the options gene_style and display from BED. How to add them to the command?

Thanks.

shunliubio commented 2 years ago

Probably I know how to add them now.

coolbox add XAxis - add BED gencode.v36.annotation.bed --gene_style=normal --display=collapsed - add TrackHeight "1.0" - goto "chr12:67301820-67323820" - plot test.pdf

It works using this command.