[ERROR:frame.py:215 - plot()] Error occured when plot track:
track name: SNP.14
track type:<class 'coolbox.core.track.hist.snp.SNP'>
Error: <class 'KeyError'> 'score'
occurred in "/opt/conda/lib/python3.8/site-packages/coolbox/core/frame/frame.py", line 209
[ERROR:frame.py:222 - plot()] 'score'
Traceback (most recent call last):
File "/opt/conda/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 3080, in get_loc
return self._engine.get_loc(casted_key)
File "pandas/_libs/index.pyx", line 70, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 101, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 4554, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 4562, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'score'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/conda/lib/python3.8/site-packages/coolbox/core/frame/frame.py", line 209, in plot
track.plot(ax, copy(gr), gr2=copy(gr2))
File "/opt/conda/lib/python3.8/site-packages/coolbox/core/track/hist/base.py", line 101, in plot
data = self.fetch_plot_data(gr, **kwargs)
File "/opt/conda/lib/python3.8/site-packages/coolbox/core/track/hist/snp.py", line 75, in fetch_plot_data
df['score'] = self.transform_fn()(df['score'])
File "/opt/conda/lib/python3.8/site-packages/pandas/core/frame.py", line 3024, in __getitem__
indexer = self.columns.get_loc(key)
File "/opt/conda/lib/python3.8/site-packages/pandas/core/indexes/base.py", line 3082, in get_loc
raise KeyError(key) from err
KeyError: 'score'
Ideally, plotting a range containing no SNPs would just return an empty track?
Hi there, thanks for such a useful package.
I have encountered a bug when I try to plot a SNP track containing no SNPs in the plotted region.
If I am working with a TSV file:
And I try to plot a track like this:
Then I get the error:
Ideally, plotting a range containing no SNPs would just return an empty track?