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GangCaoLab / CoolBox

Jupyter notebook based genomic data visualization toolkit.
https://gangcaolab.github.io/CoolBox/index.html
GNU General Public License v3.0
224 stars 37 forks source link

Installation fail with pip python3.9 #77

Open xunchen85 opened 1 year ago

xunchen85 commented 1 year ago

Can it be used on the MacOS M1 version?

Thanks

It got the following error:

Screenshot 2022-11-18 at 12 29 31
mctackett20 commented 1 year ago

Have you gotten this to work? I am having the same issue

xunchen85 commented 1 year ago

Not yet unfortunately

Nanguage commented 1 year ago

Looks like a macOS-related issue, try this:

export HDF5_DIR=/opt/homebrew/opt/hdf5 
export BLOSC_DIR=/opt/homebrew/opt/c-blosc

Then install again

zhqu1148980644 commented 1 year ago

You can intall it in docker as other software issues may appear in macos. For the issue above, you may try brew install hdf5 before installing cooler.