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GangCaoLab / CoolBox

Jupyter notebook based genomic data visualization toolkit.
https://gangcaolab.github.io/CoolBox/index.html
GNU General Public License v3.0
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No insulation score is being plotted #81

Closed aminakur closed 1 year ago

aminakur commented 1 year ago

I am trying to plot insulation score of my .mcool matrix with InsuScore:

cool = '/scratch/ak8725/az_mrg/az5kb.cool'
tads = '/scratch/ak8725/az_mrg/TADs_5kb_two_tools_intersect_80.bed'
test_region = "chr01:24600000-26350000"

frame = XAxis() + \
    InsuScore(cool, style='window') + Title("IS window_size=20") + Spacer(0.2) + \
    HiCMat(cool, style='window', depth_ratio=0.3) + Title('TADs') + \
    TADCoverage(tads, border_only=True, border_style = 'solid', border_color = 'black', alpha=1.0)

frame.plot(test_region)

And an empty track gets displayed:

image